JIPipe Artifact Package Index

Browse and discover JIPipe artifacts packages

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omnipose

0.2.1

Omnipose: an improved version of Cellpose with better generalization

Ruman Gerst
ruman.gerst@leibniz-hki.de
https://github.com/kevinjohncutler/omnipose/blob/main/LICENSE 
com.github.kevinjohncutler.omnipose:0.2.1-*

Sources:

oras/ghcr

omnipose

0.2.1.1000

Omnipose: an improved version of Cellpose with better generalization

Ruman Gerst
ruman.gerst@leibniz-hki.de
https://github.com/kevinjohncutler/omnipose/blob/main/LICENSE 
com.github.kevinjohncutler.omnipose:0.2.1.1000-*

Sources:

oras/ghcr

cellpose3

3.1.1.1.1000

Cellpose3 standalone distribution

Ruman Gerst
ruman.gerst@leibniz-hki.de
BSD-3-Clause 
com.github.mouseland.cellpose3:3.1.1.1.1000-*

Sources:

oras/ghcr

cellpose3

3.1.1.1.1001

Cellpose3 standalone distribution

Ruman Gerst
ruman.gerst@leibniz-hki.de
BSD-3-Clause 
com.github.mouseland.cellpose3:3.1.1.1.1001-*

Sources:

oras/ghcr

cellpose4

4.0.7.1000

cellpose4 standalone distribution

Ruman Gerst
ruman.gerst@leibniz-hki.de
BSD-3-Clause 
com.github.mouseland.cellpose4:4.0.7.1000-*

Sources:

oras/ghcr

cellpose

2.1.0

Cellpose standalone distribution

Ruman Gerst
ruman.gerst@leibniz-hki.de
BSD-3-Clause 
com.github.mouseland.cellpose:2.1.0-*

Sources:

oras/ghcr

cellpose

2.1.0.1000

Cellpose standalone distribution

Ruman Gerst
ruman.gerst@leibniz-hki.de
BSD-3-Clause 
com.github.mouseland.cellpose:2.1.0.1000-*

Sources:

oras/ghcr

tesseract

5.5.0.1000

Tesseract OCR is an open-source OCR engine with support for many languages

Ruman Gerst
ruman.gerst@leibniz-hki.de
Apache-2.0 
com.github.tesseractocr.tesseract:5.5.0.1000-*

Sources:

oras/ghcr

tsoax

0.2.0

TSOAX: A tool for analyzing and processing biological image data

Ruman Gerst
ruman.gerst@leibniz-hki.de
LGPL-3.0 
com.github.tix209.tsoax:0.2.0-*

Sources:

oras/ghcr

oras

1.3.0

Download for ORAS

Ruman Gerst
ruman.gerst@leibniz-hki.de
Apache-2.0 
land.oras.oras:1.3.0-*

Sources:

http/main
1.3.0-linux_amd64 1.3.0-macos-arm64 1.3.0-macos_amd64 1.3.0-windows_amd64

ilastik

1.4.0

Ilastik is a simple, interactive tool for image segmentation, classification, and tracking

Ruman Gerst
ruman.gerst@leibniz-hki.de
GPL-2.0 
org.embl.ilastik:1.4.0-*

Sources:

oras/ghcr

circle2macrophage

1.0.0

Circle2macrophage tool for cell analysis

Ruman Gerst
ruman.gerst@leibniz-hki.de
BSD-2-Clause 
org.hkijena.circle2macrophage:1.0.0-*

Sources:

oras/ghcr

jipipe_python_adapter

0.3.0

Python Adapter for JIPipe

Ruman Gerst
ruman.gerst@leibniz-hki.de
MIT 
org.hkijena.jipipe_python_adapter:0.3.0-*

Sources:

oras/ghcr

napari

0.5.5.1000

napari - fast, interactive, multi-dimensional image viewer for Python

Ruman Gerst
ruman.gerst@leibniz-hki.de
BSD-3-Clause 
org.napari.napari:0.5.5.1000-*

Sources:

oras/ghcr

python_prepackaged

3.10.15.1000

Standalone Python distribution

Ruman Gerst
ruman.gerst@leibniz-hki.de
MPL-2.0 
org.python.python_prepackaged:3.10.15.1000-*

Sources:

oras/ghcr

python_prepackaged

3.8

Standalone Python distribution

Ruman Gerst
ruman.gerst@leibniz-hki.de
MPL-2.0 
org.python.python_prepackaged:3.8-*

Sources:

oras/ghcr

r_prepackaged

4.1.2

Standalone R distribution

Ruman Gerst
ruman.gerst@leibniz-hki.de
GPL-3 
org.r.r_prepackaged:4.1.2-*

Sources:

oras/ghcr

r_prepackaged

4.4.0

Standalone R distribution

Ruman Gerst
ruman.gerst@leibniz-hki.de
GPL-3 
org.r.r_prepackaged:4.4.0-*

Sources:

oras/ghcr

r_prepackaged

4.4.0.1000

Standalone R distribution

Ruman Gerst
ruman.gerst@leibniz-hki.de
GPL-3 
org.r.r_prepackaged:4.4.0.1000-*

Sources:

oras/ghcr

r_prepackaged

4.4.0.1001

Standalone R distribution

Ruman Gerst
ruman.gerst@leibniz-hki.de
GPL-3 
org.r.r_prepackaged:4.4.0.1001-*

Sources:

oras/ghcr

r_prepackaged

4.4.0.1002

Standalone R distribution

Ruman Gerst
ruman.gerst@leibniz-hki.de
GPL-3 
org.r.r_prepackaged:4.4.0.1002-*

Sources:

oras/ghcr

sample_images

1.0.0.1000

Fiji sample images (repackaged)

Ruman Gerst
ruman.gerst@leibniz-hki.de
GPL-3.0 
sc.fiji.sample_images:1.0.0.1000-*

Sources:

oras/ghcr

About JIPipe

JIPipe is a platform for image analysis and data processing. This package index provides easy access to prepackaged software and dependencies for various computational tasks.

All packages are carefully curated and tested to ensure compatibility and reliability.