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Building on Windows Cygwin

We tested building on Windows via the Cygwin64 environment.

Please note that the Visual Studio compiler is not supported due to missing OpenMP 3.x capabilities.

We consider building on Windows experimental due to unexplained freezing of multi-threaded workloads if started from ImageJ (running directly within the command line does not show this behavior).

Prerequisites

Download and install Cygwin64. Please consider our Readme file for a list of required packages.

Using the superbuild script

We provide fully automated scripts that installs MISA++ Core, the modules we provide, and all necessary dependencies.

  1. Download or clone the MISA++ Utils repository
  2. Open an Cygwin shell and navigate into the windows-builds/cygwin folder
  3. Run ./build.sh
  4. Run ./package.sh

We cannot guarantee that all URLs within the build scripts stay valid forever. If a download fails, replace the URL in the affected build script.