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Managing applications

The MISA++ ImageJ plugin can be launched by navigating to Plugins → MISA++ for ImageJ. This will open a tool that lists all installed MISA++ applications (modules) and add more modules.

The user interface is divided into three sections:

The list of applications
Information and tools that are related to the current application
A toolbar with global actions

Application list

This will list all currently known applications with a name, an unique identifier and the version.

Click on an entry to select an application.

Current application

Following information is shown about the currently selected application:

Name
Unique identifier and version
File that tells MISA++ for ImageJ that this application exists
A short description

You have following available actions:

Action	Description
Show documentation	Opens the manual of the selected application. This manual is not the same as the ImageJ plugin manual. It contains information like dependency libraries (including citations if provided) and all information to run the command line application without our ImageJ plugin.
Remove	Removes the application from the list. This will not remove the application from your computer. If the application is installed system-wide the button is disabled.
Launch	Opens a tool that allows you to analyze data with the selected application (see Analyzing data)

Toolbar actions

Following actions are available:

Action	Description
Refresh	Updates the list of available MISA++ applications.
Add module ...	Allows you to add a MISA++ application this is not installed system-wide. Open the MISA++ application executable to add it to the list.
Connect modules together ...	Opens the pipeline builder tool (see Creating pipelines)
Analyze result ...	Opens a tool to analyze the output of a MISA++ application (see Analyzing results)
Analyze runtime log ...	Opens a developer-tool to analyze the runtime of a MISA++ application. See Analyzing the runtime for more information.
Help	Opens the documentation.